STRINGSTRING
UMN179_02028 protein (Gallibacterium anatis) - STRING interaction network
"UMN179_02028" - Endoribonuclease L-PSP in Gallibacterium anatis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UMN179_02028Endoribonuclease L-PSP (117 aa)    
Predicted Functional Partners:
UMN179_02027
MarC family integral membrane protein (217 aa)
              0.676
UMN179_02026
Putative binding protein (497 aa)
              0.676
dadA
D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids (419 aa)
        0.660
rph
Ribonuclease PH; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (239 aa)
       
    0.638
UMN179_02029
Hypothetical protein (237 aa)
              0.600
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (701 aa)
     
    0.586
UMN179_01404
Bifunctional acetaldehyde-CoA/alcohol dehydrogenase (871 aa)
   
  0.578
UMN179_01968
Succinate-semialdehyde dehydrogenase (497 aa)
   
  0.544
UMN179_01656
Gamma-aminobutyraldehyde dehydrogenase (495 aa)
   
  0.544
UMN179_01458
Betaine aldehyde dehydrogenase (504 aa)
   
  0.544
Your Current Organism:
Gallibacterium anatis
NCBI taxonomy Id: 1005058
Other names: G. anatis, G. anatis UMN179, Gallibacterium, Gallibacterium Christensen et al. 2003 emend. Bisgaard et al. 2009, Gallibacterium anatis, Gallibacterium anatis UMN179, Gallibacterium anatis str. UMN179, Gallibacterium anatis strain UMN179, Pasteurella anatis, Salpingitia sp. 10672/6, Salpingitia sp. 10672/9, Salpingitia sp. 12158, Salpingitia sp. 20558, Salpingitia sp. 36961/sv7, Salpingitia sp. BJ3453, Salpingitia sp. BK3387.2, Salpingitia sp. CCM 5995, Salpingitia sp. Gerl.220, Salpingitia sp. Gerl.3348/80, Salpingitia sp. Gerl.4224, Salpingitia sp. IPDH 697/78, avian Pasteurella haemolytica complex
Server load: low (9%) [HD]