STRINGSTRING
UMN179_02339 protein (Gallibacterium anatis) - STRING interaction network
"UMN179_02339" - CRISPR-associated protein in Gallibacterium anatis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UMN179_02339CRISPR-associated protein (189 aa)    
Predicted Functional Partners:
UMN179_02341
CRISPR-associated protein (335 aa)
 
     
  0.976
UMN179_02340
CRISPR-associated protein (333 aa)
 
     
  0.976
UMN179_02342
CRISPR-associated protein (434 aa)
 
     
  0.975
UMN179_02338
CRISPR-associated helicase Cas3 (1011 aa)
 
     
  0.850
UMN179_01009
Type II secretory pathway, component PulJ (240 aa)
   
          0.486
UMN179_00008
Putative transcriptional regulator (403 aa)
   
          0.475
UMN179_02343
Ammonium transporter (430 aa)
              0.429
UMN179_02147
Hypothetical protein (438 aa)
   
          0.428
UMN179_02166
Outer membrane phosphoporin protein E (381 aa)
   
          0.413
oadG
Oxaloacetate decarboxylase subunit gamma; Lyase and sodium transporter (88 aa)
   
          0.413
Your Current Organism:
Gallibacterium anatis
NCBI taxonomy Id: 1005058
Other names: G. anatis, G. anatis UMN179, Gallibacterium, Gallibacterium Christensen et al. 2003 emend. Bisgaard et al. 2009, Gallibacterium anatis, Gallibacterium anatis UMN179, Gallibacterium anatis str. UMN179, Gallibacterium anatis strain UMN179, Pasteurella anatis, Salpingitia sp. 10672/6, Salpingitia sp. 10672/9, Salpingitia sp. 12158, Salpingitia sp. 20558, Salpingitia sp. 36961/sv7, Salpingitia sp. BJ3453, Salpingitia sp. BK3387.2, Salpingitia sp. CCM 5995, Salpingitia sp. Gerl.220, Salpingitia sp. Gerl.3348/80, Salpingitia sp. Gerl.4224, Salpingitia sp. IPDH 697/78, avian Pasteurella haemolytica complex
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