STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_017805SMC_N domain-containing protein. (246 aa)    
Predicted Functional Partners:
BN1708_001906
Uncharacterized protein.
   
 0.995
BN1708_005868
Uncharacterized protein.
   
 0.995
BN1708_016487
EXS domain-containing protein.
   
 0.993
BN1708_007625
Uncharacterized protein.
   
 0.993
BN1708_004533
Uncharacterized protein.
   
 0.987
BN1708_015689
Uncharacterized protein.
   
 0.987
BN1708_009579
Rad21_Rec8_N domain-containing protein.
   
 0.981
BN1708_003537
Rad21_Rec8_N domain-containing protein.
   
 0.981
BN1708_017775
Uncharacterized protein.
   
 0.975
BN1708_007961
Sister chromatid cohesion protein.
   
 0.975
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.