STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_013533Uncharacterized protein. (327 aa)    
Predicted Functional Partners:
BN1708_019653
Thymidylat_synt domain-containing protein.
   
 
 0.608
BN1708_003775
2Fe-2S ferredoxin-type domain-containing protein.
   
 0.599
BN1708_003767
2Fe-2S ferredoxin-type domain-containing protein.
   
 0.599
BN1708_017019
PKS_AT domain-containing protein.
  
 0.571
BN1708_002140
Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.
   
 0.548
BN1708_011641
Cytochrome b5 heme-binding domain-containing protein.
   
 0.548
BN1708_018579
FA_desaturase domain-containing protein; Belongs to the fatty acid desaturase type 1 family.
   
 0.548
BN1708_001057
Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.
   
 0.548
BN1708_013225
PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.530
BN1708_018333
Ketoacyl_synth_N domain-containing protein.
  
 0.530
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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