STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0819Nucleotide excision repair protein, with UvrB/UvrC motif. (156 aa)    
Predicted Functional Partners:
CHISP_0818
Putative ATP:guanido phosphotransferase.
 
  
 0.992
CHISP_0817
ATP-dependent chaperone protein ClpB.
 
  
 0.903
CHISP_0087
Protein tyrosine phosphatase.
  
   
 0.764
CHISP_1027
Hypothetical protein.
  
     0.689
CHISP_0358
Type VI secretion system ATPase, ClpV1 family.
  
  
 0.656
CHISP_2312
ATP-dependent chaperone protein ClpB.
  
  
 0.656
CHISP_0820
Lipoprotein releasing system ATP-binding protein LolD.
       0.544
CHISP_2222
Phosphohydrolase.
  
     0.455
CHISP_0821
Lipoprotein releasing system transmembrane protein LolC.
       0.448
CHISP_1764
Sporulation protein YtfJ.
  
     0.422
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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