STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_3539DEAD/DEAH box helicase. (879 aa)    
Predicted Functional Partners:
CHISP_1683
DNA polymerase I.
  
 0.953
CHISP_1259
DNA polymerase III, epsilon subunit.
   
 0.952
CHISP_1626
DNA-directed RNA polymerase beta subunit.
   
 0.916
CHISP_1657
DNA-directed RNA polymerase alpha subunit.
    
  0.912
CHISP_3089
Hypothetical protein.
  
 
  0.865
CHISP_0666
ATP-dependent helicase HepA.
   
 0.809
CHISP_0674
Serine/threonine protein kinase.
   
 0.800
CHISP_1907
Hypothetical protein.
    
  0.783
CHISP_1222
Helicase domain protein.
   
 0.778
CHISP_2426
Helicase, SNF2/RAD54 family.
   
 0.778
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.