STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmem198bTransmembrane protein 198b. (350 aa)    
Predicted Functional Partners:
4931406B18Rik
RIKEN cDNA 4931406B18 gene.
   
  
 0.670
Teddm3
Transmembrane epididymal family member 3.
      
 0.642
Prorsd1
Prolyl-tRNA synthetase associated domain-containing protein 1.
      
 0.637
Gm4787
Predicted gene, EG214321.
      
 0.607
Ccdc162
Coiled-coil domain-containing protein 162.
      
 0.607
Prss40
Serine protease 40; May play an important role in the sperm/egg interaction; released during the acrosome reaction; Belongs to the peptidase S1 family.
      
 0.604
Olfr159
Olfactory receptor.
      
 0.575
Cst13
Cystatin-13; May perform a specialized role during sperm development and maturation; Belongs to the cystatin family.
      
 0.564
Zfp35
Zinc finger protein 271; May act to control gene activity during the pachytene stage of meiotic prophase. May function as a transcription activator.
   
  
 0.559
Tmed11
Transmembrane emp24 domain-containing protein 11; Part of a complex whose function is to bind Ca(2+) to the ER membrane and thereby regulate the retention of ER resident proteins. Belongs to the EMP24/GP25L family.
      
 0.552
Your Current Organism:
Mus musculus
NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice
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