STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccdc144bCoiled-coil domain-containing 144B. (520 aa)    
Predicted Functional Partners:
Pot1b
Protection of telomeres 1B.
   
    0.802
Ankrd7
Ankyrin repeat domain-containing protein 7.
 
 
 
 0.775
1700074P13Rik
RIKEN cDNA 1700074P13 gene; Belongs to the peptidase S1 family.
    
 
 0.709
4933409G03Rik
RIKEN cDNA 4933409G03 gene.
      
 0.691
Skint8
Selection and upkeep of intraepithelial T-cells protein 8; May act by engaging a cell surface molecule on immature T- cells in the embryonic thymus.
   
   0.686
Rdh1
Retinol dehydrogenase 1 (All trans); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.652
Tcte2
T-complex-associated testis-expressed 2.
   
  
 0.621
Lca5l
Lebercilin-like protein.
   
  
 0.607
Fam178b
Protein FAM178B.
      
 0.607
Samd15
Sterile alpha motif domain-containing protein 15.
      
 0.607
Your Current Organism:
Mus musculus
NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice
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