Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
H3c1 | H3c13 | ENSMUSP00000089293 | ENSMUSP00000096442 | H3 clustered histone 1. | H3 clustered histone 13. | 0.866 |
H3c1 | H3c2 | ENSMUSP00000089293 | ENSMUSP00000089295 | H3 clustered histone 1. | H3 clustered histone 2. | 0.868 |
H3c1 | H3c3 | ENSMUSP00000089293 | ENSMUSP00000089346 | H3 clustered histone 1. | H3 clustered histone 3. | 0.868 |
H3c1 | H3c4 | ENSMUSP00000089293 | ENSMUSP00000100737 | H3 clustered histone 1. | H3 clustered histone 4. | 0.866 |
H3c1 | H3c6 | ENSMUSP00000089293 | ENSMUSP00000100739 | H3 clustered histone 1. | H3 clustered histone 6. | 0.866 |
H3c1 | H3c7 | ENSMUSP00000089293 | ENSMUSP00000074994 | H3 clustered histone 1. | Histone H3.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.899 |
H3c1 | H3c8 | ENSMUSP00000089293 | ENSMUSP00000079670 | H3 clustered histone 1. | Histone H3.1; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.909 |
H3c1 | H3f3a | ENSMUSP00000089293 | ENSMUSP00000124509 | H3 clustered histone 1. | H3.3 histone A. | 0.900 |
H3c1 | H3f3b | ENSMUSP00000089293 | ENSMUSP00000102062 | H3 clustered histone 1. | Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] | 0.900 |
H3c1 | Zmynd11 | ENSMUSP00000089293 | ENSMUSP00000106268 | H3 clustered histone 1. | Zinc finger MYND domain-containing protein 11; Chromatin reader that specifically recognizes and binds histone H3.3 trimethylated at 'Lys-36' (H3.3K36me3) and regulates RNA polymerase II elongation. Does not bind other histone H3 subtypes (H3.1 or H3.2). Colocalizes with highly expressed genes and functions as a transcription corepressor by modulating RNA polymerase II at the elongation stage. Binds non-specifically to dsDNA (By similarity). Acts as a tumor-suppressor by repressing a transcriptional program essential for tumor cell growth. | 0.900 |
H3c13 | H3c1 | ENSMUSP00000096442 | ENSMUSP00000089293 | H3 clustered histone 13. | H3 clustered histone 1. | 0.866 |
H3c13 | H3c2 | ENSMUSP00000096442 | ENSMUSP00000089295 | H3 clustered histone 13. | H3 clustered histone 2. | 0.909 |
H3c13 | H3c3 | ENSMUSP00000096442 | ENSMUSP00000089346 | H3 clustered histone 13. | H3 clustered histone 3. | 0.908 |
H3c13 | H3c4 | ENSMUSP00000096442 | ENSMUSP00000100737 | H3 clustered histone 13. | H3 clustered histone 4. | 0.908 |
H3c13 | H3c6 | ENSMUSP00000096442 | ENSMUSP00000100739 | H3 clustered histone 13. | H3 clustered histone 6. | 0.908 |
H3c13 | H3c7 | ENSMUSP00000096442 | ENSMUSP00000074994 | H3 clustered histone 13. | Histone H3.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.908 |
H3c13 | H3c8 | ENSMUSP00000096442 | ENSMUSP00000079670 | H3 clustered histone 13. | Histone H3.1; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.865 |
H3c13 | H3f3a | ENSMUSP00000096442 | ENSMUSP00000124509 | H3 clustered histone 13. | H3.3 histone A. | 0.871 |
H3c13 | H3f3b | ENSMUSP00000096442 | ENSMUSP00000102062 | H3 clustered histone 13. | Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] | 0.870 |
H3c13 | Zmynd11 | ENSMUSP00000096442 | ENSMUSP00000106268 | H3 clustered histone 13. | Zinc finger MYND domain-containing protein 11; Chromatin reader that specifically recognizes and binds histone H3.3 trimethylated at 'Lys-36' (H3.3K36me3) and regulates RNA polymerase II elongation. Does not bind other histone H3 subtypes (H3.1 or H3.2). Colocalizes with highly expressed genes and functions as a transcription corepressor by modulating RNA polymerase II at the elongation stage. Binds non-specifically to dsDNA (By similarity). Acts as a tumor-suppressor by repressing a transcriptional program essential for tumor cell growth. | 0.900 |
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