Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
2310057J18Rik | Soga3 | ENSMUSP00000015663 | ENSMUSP00000090293 | Protein LEG1 homolog; May be involved in early liver development. Belongs to the LEG1 family. | Protein SOGA3. | 0.558 |
9330159F19Rik | Pcdhgb5 | ENSMUSP00000090291 | ENSMUSP00000142010 | RIKEN cDNA 9330159F19 gene. | Protocadherin gamma subfamily B, 5. | 0.515 |
9330159F19Rik | Ripply2 | ENSMUSP00000090291 | ENSMUSP00000055369 | RIKEN cDNA 9330159F19 gene. | Protein ripply2; Plays a role in somitogenesis. Required for somite segregation and establishment of rostrocaudal polarity in somites. Belongs to the ripply family. | 0.552 |
9330159F19Rik | Soga3 | ENSMUSP00000090291 | ENSMUSP00000090293 | RIKEN cDNA 9330159F19 gene. | Protein SOGA3. | 0.443 |
9330159F19Rik | Zbtb17 | ENSMUSP00000090291 | ENSMUSP00000006377 | RIKEN cDNA 9330159F19 gene. | Zinc finger and BTB domain-containing protein 17; Transcription factor that can function as an activator or repressor depending on its binding partners, and by targeting negative regulators of cell cycle progression. Has been shown to bind to the promoters of adenovirus major late protein and cyclin D1 and activate transcription. Required for early embryonic development during gastrulation. Plays a critical role in early lymphocyte development, where it is essential to prevent apoptosis in lymphoid precursors, allowing them to survive in response to IL7 and undergo proper lineage commi [...] | 0.459 |
Brinp1 | Soga3 | ENSMUSP00000030036 | ENSMUSP00000090293 | BMP/retinoic acid-inducible neural-specific protein 1; Inhibits cell proliferation by negative regulation of the G1/S transition. Mediates cell death which is not of the classical apoptotic type and regulates expression of components of the plasminogen pathway; Belongs to the BRINP family. | Protein SOGA3. | 0.428 |
Cops7a | Soga3 | ENSMUSP00000108058 | ENSMUSP00000090293 | COP9 signalosome complex subunit 7a; Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF- type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, JUN, I-kappa-B-alpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-de [...] | Protein SOGA3. | 0.405 |
Echdc1 | Soga3 | ENSMUSP00000020034 | ENSMUSP00000090293 | Ethylmalonyl-CoA decarboxylase; Decarboxylates ethylmalonyl-CoA, a potentially toxic metabolite, to form butyryl-CoA, suggesting it might be involved in metabolite proofreading. Also has methylmalonyl-CoA decarboxylase activity at lower level; Belongs to the enoyl-CoA hydratase/isomerase family. | Protein SOGA3. | 0.415 |
Lsm12 | Soga3 | ENSMUSP00000021297 | ENSMUSP00000090293 | Protein LSM12 homolog; Belongs to the LSM12 family. | Protein SOGA3. | 0.400 |
Necab1 | Soga3 | ENSMUSP00000038165 | ENSMUSP00000090293 | N-terminal EF-hand calcium-binding protein 1. | Protein SOGA3. | 0.424 |
Pcdhgb5 | 9330159F19Rik | ENSMUSP00000142010 | ENSMUSP00000090291 | Protocadherin gamma subfamily B, 5. | RIKEN cDNA 9330159F19 gene. | 0.515 |
Pcdhgb5 | Soga3 | ENSMUSP00000142010 | ENSMUSP00000090293 | Protocadherin gamma subfamily B, 5. | Protein SOGA3. | 0.556 |
Ripply2 | 9330159F19Rik | ENSMUSP00000055369 | ENSMUSP00000090291 | Protein ripply2; Plays a role in somitogenesis. Required for somite segregation and establishment of rostrocaudal polarity in somites. Belongs to the ripply family. | RIKEN cDNA 9330159F19 gene. | 0.552 |
Ripply2 | Soga3 | ENSMUSP00000055369 | ENSMUSP00000090293 | Protein ripply2; Plays a role in somitogenesis. Required for somite segregation and establishment of rostrocaudal polarity in somites. Belongs to the ripply family. | Protein SOGA3. | 0.597 |
Soga3 | 2310057J18Rik | ENSMUSP00000090293 | ENSMUSP00000015663 | Protein SOGA3. | Protein LEG1 homolog; May be involved in early liver development. Belongs to the LEG1 family. | 0.558 |
Soga3 | 9330159F19Rik | ENSMUSP00000090293 | ENSMUSP00000090291 | Protein SOGA3. | RIKEN cDNA 9330159F19 gene. | 0.443 |
Soga3 | Brinp1 | ENSMUSP00000090293 | ENSMUSP00000030036 | Protein SOGA3. | BMP/retinoic acid-inducible neural-specific protein 1; Inhibits cell proliferation by negative regulation of the G1/S transition. Mediates cell death which is not of the classical apoptotic type and regulates expression of components of the plasminogen pathway; Belongs to the BRINP family. | 0.428 |
Soga3 | Cops7a | ENSMUSP00000090293 | ENSMUSP00000108058 | Protein SOGA3. | COP9 signalosome complex subunit 7a; Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF- type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, JUN, I-kappa-B-alpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-de [...] | 0.405 |
Soga3 | Echdc1 | ENSMUSP00000090293 | ENSMUSP00000020034 | Protein SOGA3. | Ethylmalonyl-CoA decarboxylase; Decarboxylates ethylmalonyl-CoA, a potentially toxic metabolite, to form butyryl-CoA, suggesting it might be involved in metabolite proofreading. Also has methylmalonyl-CoA decarboxylase activity at lower level; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.415 |
Soga3 | Lsm12 | ENSMUSP00000090293 | ENSMUSP00000021297 | Protein SOGA3. | Protein LSM12 homolog; Belongs to the LSM12 family. | 0.400 |
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