Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Arglu1 | Gm20521 | ENSMUSP00000039493 | ENSMUSP00000117229 | Arginine and glutamate-rich protein 1. | Predicted gene 20521. | 0.420 |
Arglu1 | Pabpn1 | ENSMUSP00000039493 | ENSMUSP00000022808 | Arginine and glutamate-rich protein 1. | Polyadenylate-binding protein 2; Involved in the 3'-end formation of mRNA precursors (pre- mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Is also present at various stages of mRNA metabolism including nucleocytoplasmic trafficking and nonsense-mediated decay (NMD) of mRNA. Cooperates with SKIP to synergistically activate E-box-mediated transcription [...] | 0.487 |
Arglu1 | Rbm26 | ENSMUSP00000039493 | ENSMUSP00000097901 | Arginine and glutamate-rich protein 1. | RNA-binding protein 26. | 0.659 |
Arglu1 | Srek1 | ENSMUSP00000039493 | ENSMUSP00000147737 | Arginine and glutamate-rich protein 1. | Splicing regulatory glutamine/lysine-rich protein 1; Participates in the regulation of alternative splicing by modulating the activity of other splice facors. Inhibits the splicing activity of SFRS1, SFRS2 and SFRS6. Augments the splicing activity of SFRS3 (By similarity); Belongs to the splicing factor SR family. | 0.790 |
Efcab14 | Rbm26 | ENSMUSP00000074025 | ENSMUSP00000097901 | EF-hand calcium-binding domain-containing protein 14. | RNA-binding protein 26. | 0.647 |
Gm20521 | Arglu1 | ENSMUSP00000117229 | ENSMUSP00000039493 | Predicted gene 20521. | Arginine and glutamate-rich protein 1. | 0.420 |
Gm20521 | Rbm26 | ENSMUSP00000117229 | ENSMUSP00000097901 | Predicted gene 20521. | RNA-binding protein 26. | 0.568 |
Gm20521 | Rbm7 | ENSMUSP00000117229 | ENSMUSP00000126374 | Predicted gene 20521. | RNA-binding protein 7; RNA-binding subunit of the trimeric nuclear exosome targeting (NEXT) complex, a complex that functions as an RNA exosome cofactor that directs a subset of non-coding short-lived RNAs for exosomal degradation. NEXT is involved in surveillance and turnover of aberrant transcripts and non-coding RNAs. Binds preferentially polyuridine sequences and associates with newly synthesized RNAs, including pre- mRNAs and short-lived exosome substrates such as promoter upstream transcripts (PROMPTs), enhancer RNAs (eRNAs), and 3'-extended products from small nuclear RNAs (snRN [...] | 0.631 |
Gm20521 | Zcchc8 | ENSMUSP00000117229 | ENSMUSP00000142363 | Predicted gene 20521. | Zinc finger CCHC domain-containing protein 8; Scaffolding subunit of the trimeric nuclear exosome targeting (NEXT) complex. NEXT functions as an RNA exosome cofactor that directs a subset of non-coding short-lived RNAs for exosomal degradation. NEXT is involved in surveillance and turnover of aberrant transcripts and non-coding RNAs. May be involved in pre-mRNA splicing. | 0.722 |
Gm20521 | Zfc3h1 | ENSMUSP00000117229 | ENSMUSP00000044069 | Predicted gene 20521. | Zinc finger, C3H1-type-containing. | 0.916 |
Pabpn1 | Arglu1 | ENSMUSP00000022808 | ENSMUSP00000039493 | Polyadenylate-binding protein 2; Involved in the 3'-end formation of mRNA precursors (pre- mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Is also present at various stages of mRNA metabolism including nucleocytoplasmic trafficking and nonsense-mediated decay (NMD) of mRNA. Cooperates with SKIP to synergistically activate E-box-mediated transcription [...] | Arginine and glutamate-rich protein 1. | 0.487 |
Pabpn1 | Rbm26 | ENSMUSP00000022808 | ENSMUSP00000097901 | Polyadenylate-binding protein 2; Involved in the 3'-end formation of mRNA precursors (pre- mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Is also present at various stages of mRNA metabolism including nucleocytoplasmic trafficking and nonsense-mediated decay (NMD) of mRNA. Cooperates with SKIP to synergistically activate E-box-mediated transcription [...] | RNA-binding protein 26. | 0.575 |
Pabpn1 | Rbm7 | ENSMUSP00000022808 | ENSMUSP00000126374 | Polyadenylate-binding protein 2; Involved in the 3'-end formation of mRNA precursors (pre- mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Is also present at various stages of mRNA metabolism including nucleocytoplasmic trafficking and nonsense-mediated decay (NMD) of mRNA. Cooperates with SKIP to synergistically activate E-box-mediated transcription [...] | RNA-binding protein 7; RNA-binding subunit of the trimeric nuclear exosome targeting (NEXT) complex, a complex that functions as an RNA exosome cofactor that directs a subset of non-coding short-lived RNAs for exosomal degradation. NEXT is involved in surveillance and turnover of aberrant transcripts and non-coding RNAs. Binds preferentially polyuridine sequences and associates with newly synthesized RNAs, including pre- mRNAs and short-lived exosome substrates such as promoter upstream transcripts (PROMPTs), enhancer RNAs (eRNAs), and 3'-extended products from small nuclear RNAs (snRN [...] | 0.630 |
Pabpn1 | Zcchc8 | ENSMUSP00000022808 | ENSMUSP00000142363 | Polyadenylate-binding protein 2; Involved in the 3'-end formation of mRNA precursors (pre- mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Is also present at various stages of mRNA metabolism including nucleocytoplasmic trafficking and nonsense-mediated decay (NMD) of mRNA. Cooperates with SKIP to synergistically activate E-box-mediated transcription [...] | Zinc finger CCHC domain-containing protein 8; Scaffolding subunit of the trimeric nuclear exosome targeting (NEXT) complex. NEXT functions as an RNA exosome cofactor that directs a subset of non-coding short-lived RNAs for exosomal degradation. NEXT is involved in surveillance and turnover of aberrant transcripts and non-coding RNAs. May be involved in pre-mRNA splicing. | 0.733 |
Pabpn1 | Zfc3h1 | ENSMUSP00000022808 | ENSMUSP00000044069 | Polyadenylate-binding protein 2; Involved in the 3'-end formation of mRNA precursors (pre- mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Is also present at various stages of mRNA metabolism including nucleocytoplasmic trafficking and nonsense-mediated decay (NMD) of mRNA. Cooperates with SKIP to synergistically activate E-box-mediated transcription [...] | Zinc finger, C3H1-type-containing. | 0.924 |
Rbm26 | Arglu1 | ENSMUSP00000097901 | ENSMUSP00000039493 | RNA-binding protein 26. | Arginine and glutamate-rich protein 1. | 0.659 |
Rbm26 | Efcab14 | ENSMUSP00000097901 | ENSMUSP00000074025 | RNA-binding protein 26. | EF-hand calcium-binding domain-containing protein 14. | 0.647 |
Rbm26 | Gm20521 | ENSMUSP00000097901 | ENSMUSP00000117229 | RNA-binding protein 26. | Predicted gene 20521. | 0.568 |
Rbm26 | Pabpn1 | ENSMUSP00000097901 | ENSMUSP00000022808 | RNA-binding protein 26. | Polyadenylate-binding protein 2; Involved in the 3'-end formation of mRNA precursors (pre- mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Is also present at various stages of mRNA metabolism including nucleocytoplasmic trafficking and nonsense-mediated decay (NMD) of mRNA. Cooperates with SKIP to synergistically activate E-box-mediated transcription [...] | 0.575 |
Rbm26 | Rbm7 | ENSMUSP00000097901 | ENSMUSP00000126374 | RNA-binding protein 26. | RNA-binding protein 7; RNA-binding subunit of the trimeric nuclear exosome targeting (NEXT) complex, a complex that functions as an RNA exosome cofactor that directs a subset of non-coding short-lived RNAs for exosomal degradation. NEXT is involved in surveillance and turnover of aberrant transcripts and non-coding RNAs. Binds preferentially polyuridine sequences and associates with newly synthesized RNAs, including pre- mRNAs and short-lived exosome substrates such as promoter upstream transcripts (PROMPTs), enhancer RNAs (eRNAs), and 3'-extended products from small nuclear RNAs (snRN [...] | 0.554 |
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