Ttc39a protein (mouse) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Ttc39a

Tetratricopeptide repeat protein 39A. (578 aa)

Predicted Functional Partners:

5031410I06Rik

0.661

Gm10220

0.661

Nipal2

0.596

Ccdc92

0.584

Kti12

0.579

Cmtr1

0.563

Fbxw19

0.557

Ttc4

0.496

Osbpl9

0.491

AI593442

0.489

Your Current Organism:

Mus musculus

NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
5031410I06Rik	AI593442	ENSMUSP00000069697	ENSMUSP00000149532	RIKEN cDNA 5031410I06 gene.	Uncharacterized protein C11orf87 homolog.	0.707
5031410I06Rik	Ccdc92	ENSMUSP00000069697	ENSMUSP00000038075	RIKEN cDNA 5031410I06 gene.	Coiled-coil domain-containing protein 92.	0.604
5031410I06Rik	Cmtr1	ENSMUSP00000069697	ENSMUSP00000024816	RIKEN cDNA 5031410I06 gene.	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1; S-adenosyl-L-methionine-dependent methyltransferase that mediates mRNA cap1 2'-O-ribose methylation to the 5'-cap structure of mRNAs. Methylates the ribose of the first nucleotide of a m(7)GpppG- capped mRNA and small nuclear RNA (snRNA) to produce m(7)GpppRm (cap1). Displays a preference for cap0 transcripts. Cap1 modification is linked to higher levels of translation. May be involved in the interferon response pathway.	0.558
5031410I06Rik	Fbxw19	ENSMUSP00000069697	ENSMUSP00000075918	RIKEN cDNA 5031410I06 gene.	F-box and WD-40 domain protein 19.	0.746
5031410I06Rik	Gm10220	ENSMUSP00000069697	ENSMUSP00000085569	RIKEN cDNA 5031410I06 gene.	Predicted gene 10220.	0.605
5031410I06Rik	Ttc39a	ENSMUSP00000069697	ENSMUSP00000102229	RIKEN cDNA 5031410I06 gene.	Tetratricopeptide repeat protein 39A.	0.661
AI593442	5031410I06Rik	ENSMUSP00000149532	ENSMUSP00000069697	Uncharacterized protein C11orf87 homolog.	RIKEN cDNA 5031410I06 gene.	0.707
AI593442	Ccdc92	ENSMUSP00000149532	ENSMUSP00000038075	Uncharacterized protein C11orf87 homolog.	Coiled-coil domain-containing protein 92.	0.408
AI593442	Fbxw19	ENSMUSP00000149532	ENSMUSP00000075918	Uncharacterized protein C11orf87 homolog.	F-box and WD-40 domain protein 19.	0.643
AI593442	Gm10220	ENSMUSP00000149532	ENSMUSP00000085569	Uncharacterized protein C11orf87 homolog.	Predicted gene 10220.	0.707
AI593442	Kti12	ENSMUSP00000149532	ENSMUSP00000099799	Uncharacterized protein C11orf87 homolog.	Protein KTI12 homolog; Belongs to the KTI12 family.	0.468
AI593442	Ttc39a	ENSMUSP00000149532	ENSMUSP00000102229	Uncharacterized protein C11orf87 homolog.	Tetratricopeptide repeat protein 39A.	0.489
Ccdc92	5031410I06Rik	ENSMUSP00000038075	ENSMUSP00000069697	Coiled-coil domain-containing protein 92.	RIKEN cDNA 5031410I06 gene.	0.604
Ccdc92	AI593442	ENSMUSP00000038075	ENSMUSP00000149532	Coiled-coil domain-containing protein 92.	Uncharacterized protein C11orf87 homolog.	0.408
Ccdc92	Cmtr1	ENSMUSP00000038075	ENSMUSP00000024816	Coiled-coil domain-containing protein 92.	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1; S-adenosyl-L-methionine-dependent methyltransferase that mediates mRNA cap1 2'-O-ribose methylation to the 5'-cap structure of mRNAs. Methylates the ribose of the first nucleotide of a m(7)GpppG- capped mRNA and small nuclear RNA (snRNA) to produce m(7)GpppRm (cap1). Displays a preference for cap0 transcripts. Cap1 modification is linked to higher levels of translation. May be involved in the interferon response pathway.	0.524
Ccdc92	Fbxw19	ENSMUSP00000038075	ENSMUSP00000075918	Coiled-coil domain-containing protein 92.	F-box and WD-40 domain protein 19.	0.479
Ccdc92	Gm10220	ENSMUSP00000038075	ENSMUSP00000085569	Coiled-coil domain-containing protein 92.	Predicted gene 10220.	0.604
Ccdc92	Ttc39a	ENSMUSP00000038075	ENSMUSP00000102229	Coiled-coil domain-containing protein 92.	Tetratricopeptide repeat protein 39A.	0.584
Cmtr1	5031410I06Rik	ENSMUSP00000024816	ENSMUSP00000069697	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1; S-adenosyl-L-methionine-dependent methyltransferase that mediates mRNA cap1 2'-O-ribose methylation to the 5'-cap structure of mRNAs. Methylates the ribose of the first nucleotide of a m(7)GpppG- capped mRNA and small nuclear RNA (snRNA) to produce m(7)GpppRm (cap1). Displays a preference for cap0 transcripts. Cap1 modification is linked to higher levels of translation. May be involved in the interferon response pathway.	RIKEN cDNA 5031410I06 gene.	0.558
Cmtr1	Ccdc92	ENSMUSP00000024816	ENSMUSP00000038075	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1; S-adenosyl-L-methionine-dependent methyltransferase that mediates mRNA cap1 2'-O-ribose methylation to the 5'-cap structure of mRNAs. Methylates the ribose of the first nucleotide of a m(7)GpppG- capped mRNA and small nuclear RNA (snRNA) to produce m(7)GpppRm (cap1). Displays a preference for cap0 transcripts. Cap1 modification is linked to higher levels of translation. May be involved in the interferon response pathway.	Coiled-coil domain-containing protein 92.	0.524