STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pate10Secreted TFP/Ly-6/uPAR protein PATE-N. (116 aa)    
Predicted Functional Partners:
Pate7
Prostate and testis-expressed 7.
   
  
 0.881
Pate5
Prostate and testis-expressed 5.
   
  
 0.861
Pate6
Prostate and testis-expressed 6.
   
  
 0.838
Pate3
Prostate and testis expressed protein 3.
      
 0.833
Pate8
Secreted TFP/Ly-6/uPAR protein PATE-G.
   
  
 0.769
Pate11
Secreted TFP/Ly-6/uPAR protein PATE-P.
   
  
 0.750
Pate13
Prostate and testis-expressed 13.
      
 0.742
Pate9
Prostate and testis-expressed 9.
      
 0.740
Gm5916
Predicted gene 5916.
   
  
 0.734
Pate14
Secreted seminal-vesicle Ly-6 protein 1.
      
 0.717
Your Current Organism:
Mus musculus
NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice
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