STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcdhb20Protocadherin beta 20. (799 aa)    
Predicted Functional Partners:
Pcdhb17
Protocadherin beta 17.
  
  
0.893
Pcdhb21
Protocadherin beta 21.
  
  
0.865
Pcdhb19
Protocadherin beta 19.
  
  
0.850
Pcdhb16
Protocadherin beta 16.
  
  
0.847
Pcdhb18
Protocadherin beta-18; Potential calcium-dependent cell-adhesion protein.
  
  
0.821
Pcdhb12
Protocadherin beta 12.
  
  
0.650
Pcdhb15
Protocadherin beta 15.
  
  
0.620
Zfp951
Zinc finger protein 951.
      
 0.603
Pcdhb11
Protocadherin beta 11.
  
  
0.582
Pcdhb7
Protocadherin beta 7.
  
  
0.575
Your Current Organism:
Mus musculus
NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.