Lce1k protein (mouse) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Lce1k

Late cornified envelope 1K. (125 aa)

Predicted Functional Partners:

Lce1j

0.948

Lce1i

0.934

Lce1a2

0.815

Lce1b

0.814

Lce1c

0.814

Lce1e

0.814

Lce1a1

0.801

Lce1l

0.795

Lce1g

0.630

Lce1h

0.628

Your Current Organism:

Mus musculus

NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lce1a1	Lce1a2	ENSMUSP00000073776	ENSMUSP00000029530	Late cornified envelope 1A1.	Late cornified envelope 1A2.	0.969
Lce1a1	Lce1b	ENSMUSP00000073776	ENSMUSP00000029531	Late cornified envelope 1A1.	Late cornified envelope 1B.	0.985
Lce1a1	Lce1c	ENSMUSP00000073776	ENSMUSP00000045573	Late cornified envelope 1A1.	Late cornified envelope 1C.	0.914
Lce1a1	Lce1e	ENSMUSP00000073776	ENSMUSP00000088380	Late cornified envelope 1A1.	Late cornified envelope 1E.	0.809
Lce1a1	Lce1g	ENSMUSP00000073776	ENSMUSP00000029527	Late cornified envelope 1A1.	Late cornified envelope 1G.	0.666
Lce1a1	Lce1h	ENSMUSP00000073776	ENSMUSP00000058647	Late cornified envelope 1A1.	Late cornified envelope 1H.	0.706
Lce1a1	Lce1i	ENSMUSP00000073776	ENSMUSP00000088379	Late cornified envelope 1A1.	Late cornified envelope 1I.	0.880
Lce1a1	Lce1j	ENSMUSP00000073776	ENSMUSP00000140507	Late cornified envelope 1A1.	Late cornified envelope 1J.	0.681
Lce1a1	Lce1k	ENSMUSP00000073776	ENSMUSP00000137052	Late cornified envelope 1A1.	Late cornified envelope 1K.	0.801
Lce1a1	Lce1l	ENSMUSP00000073776	ENSMUSP00000057762	Late cornified envelope 1A1.	Late cornified envelope 1L.	0.844
Lce1a2	Lce1a1	ENSMUSP00000029530	ENSMUSP00000073776	Late cornified envelope 1A2.	Late cornified envelope 1A1.	0.969
Lce1a2	Lce1b	ENSMUSP00000029530	ENSMUSP00000029531	Late cornified envelope 1A2.	Late cornified envelope 1B.	0.970
Lce1a2	Lce1c	ENSMUSP00000029530	ENSMUSP00000045573	Late cornified envelope 1A2.	Late cornified envelope 1C.	0.921
Lce1a2	Lce1e	ENSMUSP00000029530	ENSMUSP00000088380	Late cornified envelope 1A2.	Late cornified envelope 1E.	0.914
Lce1a2	Lce1g	ENSMUSP00000029530	ENSMUSP00000029527	Late cornified envelope 1A2.	Late cornified envelope 1G.	0.696
Lce1a2	Lce1h	ENSMUSP00000029530	ENSMUSP00000058647	Late cornified envelope 1A2.	Late cornified envelope 1H.	0.711
Lce1a2	Lce1i	ENSMUSP00000029530	ENSMUSP00000088379	Late cornified envelope 1A2.	Late cornified envelope 1I.	0.878
Lce1a2	Lce1j	ENSMUSP00000029530	ENSMUSP00000140507	Late cornified envelope 1A2.	Late cornified envelope 1J.	0.814
Lce1a2	Lce1k	ENSMUSP00000029530	ENSMUSP00000137052	Late cornified envelope 1A2.	Late cornified envelope 1K.	0.815
Lce1a2	Lce1l	ENSMUSP00000029530	ENSMUSP00000057762	Late cornified envelope 1A2.	Late cornified envelope 1L.	0.936