STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO_15252Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (262 aa)    
Predicted Functional Partners:
ALO_00910
COG3321 Polyketide synthase modules and related proteins.
 
 0.953
ALO_10064
Siderophore 2,3-dihydroxybenzoate-glycine-threonine trimeric ester bacillibactin synthetase; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
 0.886
ALO_04306
3-oxoacyl-(acyl-carrier-protein) synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.878
ALO_00915
MtaE protein; COG3321 Polyketide synthase modules and related proteins.
  
 0.868
ALO_04286
COG0331 (acyl-carrier-protein) S-malonyltransferase.
 0.838
ALO_00920
Lichenysin synthetase A; COG3321 Polyketide synthase modules and related proteins.
  
 0.825
ALO_00935
Tyrocidine synthetase III; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 0.825
ALO_00980
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 0.825
ALO_06603
1-phosphofructokinase; COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
 
 0.815
ALO_10069
Isochorismatase; COG3433 Aryl carrier domain.
  
 
 0.815
Your Current Organism:
Acetonema longum
NCBI taxonomy Id: 1009370
Other names: A. longum DSM 6540, Acetonema longum APO-1, Acetonema longum DSM 6540, Acetonema longum str. DSM 6540, Acetonema longum strain DSM 6540
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