STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SurA_2Periplasmic chaperone for outer membrane proteins SurA. (474 aa)    
Predicted Functional Partners:
SDL29435.1
Beta-barrel assembly machine subunit BamA.
 
 
 0.782
SurA_1
Peptidyl-prolyl cis-trans isomerase D.
  
     0.758
LolE_2
Lipoprotein-releasing system permease protein.
  
     0.706
SDL55294.1
Beta-barrel assembly machine subunit BamD.
  
  
 0.688
LolE_1
Lipoprotein-releasing system permease protein.
  
     0.659
LpxH
UDP-2,3-diacylglucosamine hydrolase.
  
    0.656
SDL31563.1
Hypothetical protein.
 
  
 0.651
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
 
 
 
 0.647
SDL86386.1
Protein of unknown function.
  
     0.641
LepB
Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.627
Your Current Organism:
Sphingobacterium mizutaii
NCBI taxonomy Id: 1010
Other names: ATCC 33299, CCUG 15907, CDC group II-I, CIP 101122, DSM 11724, Flavibacterium mizutaii, Flavobacterium mizutaii, IFO 14946, JCM 21155, LMG 8340, LMG:8340, NBRC 14946, NCTC 12149, S. mizutaii, Sphingobacterium mizutae, Sphingobacterium sp. CCUG 15262, Sphingobacterium sp. CDC D3663, Sphingobacterium sp. LMG 8346, strain KC1794
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