STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sema6cSema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C. (963 aa)    
Predicted Functional Partners:
Plxna1
Plexin A1.
    
 0.895
Plxna2
Plexin A2.
    
 0.858
Plxna3
Plexin A3.
    
 0.828
Plxnc1
Plexin C1.
    
 0.817
ENSMSIP00000001658
annotation not available
    
 0.814
Plxna4
Plexin A4.
    
 0.811
Met
Met proto-oncogene.
    
 0.777
Mst1r
Macrophage stimulating 1 receptor (c-met-related tyrosine kinase).
    
 0.777
Nrp1
Neuropilin 1.
    
 0.749
Plxnb1
Plexin B1.
    
 0.710
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.