Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Agrn | Col4a1 | ENSRNOP00000050623 | ENSRNOP00000054197 | Agrin C-terminal 110 kDa subunit; [Isoform 1]: heparan sulfate basal lamina glycoprotein that plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ) and directs key events in postsynaptic differentiation. This neuron-specific (z+) isoform is a component of the AGRN-LRP4 receptor complex that induces the phosphorylation and activation of MUSK. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Calcium [...] | Collagen type IV alpha 1 chain. | 0.483 |
Agrn | Hspg2 | ENSRNOP00000050623 | ENSRNOP00000034954 | Agrin C-terminal 110 kDa subunit; [Isoform 1]: heparan sulfate basal lamina glycoprotein that plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ) and directs key events in postsynaptic differentiation. This neuron-specific (z+) isoform is a component of the AGRN-LRP4 receptor complex that induces the phosphorylation and activation of MUSK. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Calcium [...] | Uncharacterized protein. | 0.846 |
Agrn | Nid2 | ENSRNOP00000050623 | ENSRNOP00000000383 | Agrin C-terminal 110 kDa subunit; [Isoform 1]: heparan sulfate basal lamina glycoprotein that plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ) and directs key events in postsynaptic differentiation. This neuron-specific (z+) isoform is a component of the AGRN-LRP4 receptor complex that induces the phosphorylation and activation of MUSK. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Calcium [...] | Nidogen-2; Cell adhesion glycoprotein. Might be involved in osteoblast differentiation. It probably has a role in cell-extracellular matrix interactions (By similarity). | 0.813 |
Col4a1 | Agrn | ENSRNOP00000054197 | ENSRNOP00000050623 | Collagen type IV alpha 1 chain. | Agrin C-terminal 110 kDa subunit; [Isoform 1]: heparan sulfate basal lamina glycoprotein that plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ) and directs key events in postsynaptic differentiation. This neuron-specific (z+) isoform is a component of the AGRN-LRP4 receptor complex that induces the phosphorylation and activation of MUSK. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Calcium [...] | 0.483 |
Col4a1 | Col4a2 | ENSRNOP00000054197 | ENSRNOP00000054270 | Collagen type IV alpha 1 chain. | Collagen type IV alpha 2 chain. | 0.999 |
Col4a1 | Hspg2 | ENSRNOP00000054197 | ENSRNOP00000034954 | Collagen type IV alpha 1 chain. | Uncharacterized protein. | 0.690 |
Col4a1 | Lama1 | ENSRNOP00000054197 | ENSRNOP00000023224 | Collagen type IV alpha 1 chain. | Laminin subunit alpha 1. | 0.620 |
Col4a1 | Lama4 | ENSRNOP00000054197 | ENSRNOP00000000737 | Collagen type IV alpha 1 chain. | Laminin subunit alpha 4. | 0.656 |
Col4a1 | Lama5 | ENSRNOP00000054197 | ENSRNOP00000074084 | Collagen type IV alpha 1 chain. | Laminin, alpha 5, isoform CRA_a. | 0.689 |
Col4a1 | Lamb1 | ENSRNOP00000054197 | ENSRNOP00000008321 | Collagen type IV alpha 1 chain. | Laminin subunit beta 1. | 0.854 |
Col4a1 | Lamc1 | ENSRNOP00000054197 | ENSRNOP00000003605 | Collagen type IV alpha 1 chain. | Laminin subunit gamma 1. | 0.812 |
Col4a1 | Nid2 | ENSRNOP00000054197 | ENSRNOP00000000383 | Collagen type IV alpha 1 chain. | Nidogen-2; Cell adhesion glycoprotein. Might be involved in osteoblast differentiation. It probably has a role in cell-extracellular matrix interactions (By similarity). | 0.664 |
Col4a2 | Col4a1 | ENSRNOP00000054270 | ENSRNOP00000054197 | Collagen type IV alpha 2 chain. | Collagen type IV alpha 1 chain. | 0.999 |
Col4a2 | Hspg2 | ENSRNOP00000054270 | ENSRNOP00000034954 | Collagen type IV alpha 2 chain. | Uncharacterized protein. | 0.640 |
Col4a2 | Lama1 | ENSRNOP00000054270 | ENSRNOP00000023224 | Collagen type IV alpha 2 chain. | Laminin subunit alpha 1. | 0.595 |
Col4a2 | Lama4 | ENSRNOP00000054270 | ENSRNOP00000000737 | Collagen type IV alpha 2 chain. | Laminin subunit alpha 4. | 0.663 |
Col4a2 | Lama5 | ENSRNOP00000054270 | ENSRNOP00000074084 | Collagen type IV alpha 2 chain. | Laminin, alpha 5, isoform CRA_a. | 0.656 |
Col4a2 | Lamb1 | ENSRNOP00000054270 | ENSRNOP00000008321 | Collagen type IV alpha 2 chain. | Laminin subunit beta 1. | 0.769 |
Col4a2 | Lamc1 | ENSRNOP00000054270 | ENSRNOP00000003605 | Collagen type IV alpha 2 chain. | Laminin subunit gamma 1. | 0.791 |
Col4a2 | Nid2 | ENSRNOP00000054270 | ENSRNOP00000000383 | Collagen type IV alpha 2 chain. | Nidogen-2; Cell adhesion glycoprotein. Might be involved in osteoblast differentiation. It probably has a role in cell-extracellular matrix interactions (By similarity). | 0.705 |
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