STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slc15a4Solute carrier family 15 member 4; Proton oligopeptide cotransporter. Transports free histidine and certain di- and tripeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. (572 aa)    
Predicted Functional Partners:
Rbms3
RNA-binding motif, single stranded-interacting protein 3.
      
 0.639
Ap3b1
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
   
  
 0.634
Carns1
Carnosine synthase 1.
      
 0.587
Nod1
Similar to Caspase recruitment domain protein 4 (Predicted).
   
 
 0.526
Ppil4
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
      
 0.502
RGD1565785
Similar to chromosome X open reading frame 21.
    
 
 0.492
Slc1a5
Amino acid transporter.
   
 
 0.491
Slc43a2
Solute carrier family 43, member 2 (Predicted), isoform CRA_a.
   
  
 0.467
Slc7a4
Solute carrier family 7 (Cationic amino acid transporter, y+ system), member 4 (Predicted).
   
 
 0.464
Slc1a7
Amino acid transporter.
   
 
 0.463
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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