STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smim14Small integral membrane protein 14. (99 aa)    
Predicted Functional Partners:
Tcp11l1
T-complex 11-like 1.
   
  
 0.615
Mindy1
Ubiquitin carboxyl-terminal hydrolase MINDY-1; Hydrolase that can specifically remove 'Lys-48'-linked conjugated ubiquitin from proteins. Has exodeubiquitinase activity and has a preference for long polyubiquitin chains. May play a regulatory role at the level of protein turnover; Belongs to the MINDY deubiquitinase family. FAM63 subfamily.
   
  
 0.573
Bri3bp
Similar to BRI3-binding protein.
      
 0.571
Klhdc2
Kelch domain-containing protein 2; Represses CREB3-mediated transcription by interfering with CREB3-DNA binding.
      
 0.571
Samd8
Sterile alpha motif domain-containing 8.
      
 0.571
Agbl4
Peptidase_M14 domain-containing protein.
      
 0.570
Fam163a
Family with sequence similarity 163, member A.
      
 0.570
Agbl4-2
ATP/GTP-binding protein-like 4.
      
 0.570
Dhx32
DEAH-box helicase 32 (putative).
   
  
 0.565
Gnl3l
G protein nucleolar 3-like.
   
  
 0.562
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
Server load: low (30%) [HD]