STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Luc7l3Similar to cisplatin resistance-associated overexpressed protein (Predicted). (491 aa)    
Predicted Functional Partners:
Pnisr
PNN-interacting serine and arginine-rich protein.
   
  
 0.972
Prpf39
Pre-mRNA-processing factor 39.
   
 0.930
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.906
Rbm25l1
RNA-binding motif protein 25-like 1.
   
 
 0.904
Srsf11
Similar to splicing factor p54, isoform CRA_c.
   
 
 0.902
Snrnp70
U1 small nuclear ribonucleoprotein polypeptide A (Predicted), isoform CRA_c.
   
 0.901
Sf3b1
Splicing factor 3b, subunit 1, isoform CRA_b.
   
 0.873
U2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.873
Pnn
Pinin, desmosome-associated protein.
   
 
 0.852
Snrpd3
Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing.
   
 0.851
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.