STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slc25a47Solute carrier family 25 member 47; Uncoupling protein which may catalyze the physiological 'proton leak' in liver; Belongs to the mitochondrial carrier (TC 2.A.29) family. (310 aa)    
Predicted Functional Partners:
D3ZGS7_RAT
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.654
Fau
Ubiquitin-like protein FUBI.
   
   0.654
LOC687780
Ubiquitin-like protein fubi and ribosomal protein S30-like.
   
   0.654
LOC687780-2
FAU, ubiquitin like and ribosomal protein S30 fusion.
   
   0.654
Slc35f4
Solute carrier family 35, member F4.
      
 0.628
Jkamp
Similar to RIKEN cDNA 1200003C05 (Predicted).
      
 0.508
Slc16a13
Monocarboxylate transporter 13; Proton-linked monocarboxylate transporter. May catalyze the transport of monocarboxylates across the plasma membrane. Belongs to the major facilitator superfamily. Monocarboxylate porter (TC 2.A.1.13) family.
      
 0.502
Chst4
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.463
LOC306079
Similar to RIKEN cDNA 3100001N19.
   
 
 0.457
D3ZHE6_RAT
Ribosomal_L14e domain-containing protein.
   
 
 0.457
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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