STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RGD1308775Similar to RIKEN cDNA 4921536K21 (Predicted). (167 aa)    
Predicted Functional Partners:
Ttc39d
Tetratricopeptide repeat domain 39D.
   
  
 0.733
LOC24906
Protein RoBo-1; May play a novel role in the growth or remodeling of bone.
      
 0.725
LOC691286
Similar to RIKEN cDNA 4930504O13.
   
  
 0.663
Cyp2ab1
Cytochrome P450, family 2, subfamily ab, polypeptide 1; Belongs to the cytochrome P450 family.
      
 0.614
Tmbim7
Transmembrane BAX inhibitor motif-containing 7; Belongs to the BI1 family.
      
 0.565
LOC103693040
Prostate and testis-expressed protein 2-like.
      
 0.565
Dbil5
Diazepam-binding inhibitor-like 5; May be involved in the energy metabolism of the mature sperm. Belongs to the ACBP family.
      
 0.558
Wfdc16
WAP four-disulfide core domain protein 16.
      
 0.548
Hils1
Spermatid-specific linker histone H1-like protein; DNA-binding protein that may be implicated in chromatin remodeling and/or transcriptional regulation during spermiogenesis, the process of spermatid maturation into spermatozoa; Belongs to the histone H1/H5 family.
      
 0.467
Clpsl2
Colipase-like protein 2.
  
     0.404
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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