STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2cd4bC2 calcium-dependent domain-containing 4B. (340 aa)    
Predicted Functional Partners:
Scrn2
Secernin-2; Belongs to the peptidase C69 family. Secernin subfamily.
      
 0.633
Ctu2
Cytoplasmic tRNA 2-thiolation protein 2; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with CTU1/ATPBD3 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Belongs to the CTU2/NCS2 family.
      
 0.594
Vps13c
Vacuolar protein sorting 13 homolog C.
   
  
 0.570
Gcc1
GRIP and coiled-coil domain-containing 1.
      
 0.555
Slc16a11
Solute carrier family 16, member 11.
      
 0.535
Glis3
GLIS family zinc finger 3.
    
 
 0.523
Ube2e2
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
      
 0.521
R3hdml
R3H domain-containing-like.
      
 0.509
Bnipl
BCL2-interacting protein-like.
      
 0.507
Dgkb
Diacylglycerol kinase beta; Exhibits high phosphorylation activity for long-chain diacylglycerols.
      
 0.507
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.