Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Chd8 | Zfp143 | ENSRNOP00000071948 | ENSRNOP00000013733 | Chromodomain-helicase-DNA-binding protein 8; DNA helicase that acts as a chromatin remodeling factor and regulates transcription. Acts as a transcription repressor by remodeling chromatin structure and recruiting histone H1 to target genes. Suppresses p53/TP53-mediated apoptosis by recruiting histone H1 and preventing p53/TP53 transactivation activity. Acts as a negative regulator of Wnt signaling pathway by regulating beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-targeted gene expression by being recruited specifically to the promoter regions of several CTNNB1 responsive [...] | Zinc finger protein 143; Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates in efficient U6 RNA polymerase III transcription via its interaction with CHD8 (By similarity). | 0.552 |
Ezh1 | Ezh2 | ENSRNOP00000027640 | ENSRNOP00000008149 | Enhancer of zeste 1 polycomb repressive complex 2 subunit. | Similar to Enhancer of zeste homolog 2 (ENX-1), isoform CRA_b. | 0.933 |
Ezh1 | Zfp143 | ENSRNOP00000027640 | ENSRNOP00000013733 | Enhancer of zeste 1 polycomb repressive complex 2 subunit. | Zinc finger protein 143; Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates in efficient U6 RNA polymerase III transcription via its interaction with CHD8 (By similarity). | 0.541 |
Ezh2 | Ezh1 | ENSRNOP00000008149 | ENSRNOP00000027640 | Similar to Enhancer of zeste homolog 2 (ENX-1), isoform CRA_b. | Enhancer of zeste 1 polycomb repressive complex 2 subunit. | 0.933 |
Ezh2 | Pou5f1 | ENSRNOP00000008149 | ENSRNOP00000065216 | Similar to Enhancer of zeste homolog 2 (ENX-1), isoform CRA_b. | POU domain protein. | 0.651 |
Ezh2 | Rad21 | ENSRNOP00000008149 | ENSRNOP00000006209 | Similar to Enhancer of zeste homolog 2 (ENX-1), isoform CRA_b. | RAD21 cohesin complex component. | 0.504 |
Ezh2 | Zfp143 | ENSRNOP00000008149 | ENSRNOP00000013733 | Similar to Enhancer of zeste homolog 2 (ENX-1), isoform CRA_b. | Zinc finger protein 143; Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates in efficient U6 RNA polymerase III transcription via its interaction with CHD8 (By similarity). | 0.544 |
Gata1 | Zfp143 | ENSRNOP00000038111 | ENSRNOP00000013733 | Erythroid transcription factor; Transcriptional activator or repressor which probably serves as a general switch factor for erythroid development. It binds to DNA sites with the consensus sequence 5'-[AT]GATA[AG]-3' within regulatory regions of globin genes and of other genes expressed in erythroid cells. Activates the transcription of genes involved in erythroid differentiation of K562 erythroleukemia cells, including HBB, HBG1/2, ALAS2 and HMBS. | Zinc finger protein 143; Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates in efficient U6 RNA polymerase III transcription via its interaction with CHD8 (By similarity). | 0.559 |
LOC108348091 | Zfp143 | ENSRNOP00000067336 | ENSRNOP00000013733 | GATA binding protein 1. | Zinc finger protein 143; Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates in efficient U6 RNA polymerase III transcription via its interaction with CHD8 (By similarity). | 0.560 |
Lin28b | Pou5f1 | ENSRNOP00000037788 | ENSRNOP00000065216 | Lin-28 homolog B. | POU domain protein. | 0.558 |
Lin28b | Zfp143 | ENSRNOP00000037788 | ENSRNOP00000013733 | Lin-28 homolog B. | Zinc finger protein 143; Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates in efficient U6 RNA polymerase III transcription via its interaction with CHD8 (By similarity). | 0.569 |
Mxi1 | Six5 | ENSRNOP00000040770 | ENSRNOP00000074243 | Max-interacting protein 1; Transcriptional repressor. MXI1 binds with MAX to form a sequence-specific DNA-binding protein complex which recognizes the core sequence 5'-CAC[GA]TG-3'. MXI1 thus antagonizes MYC transcriptional activity by competing for MAX. | SIX homeobox 5. | 0.550 |
Mxi1 | Zfp143 | ENSRNOP00000040770 | ENSRNOP00000013733 | Max-interacting protein 1; Transcriptional repressor. MXI1 binds with MAX to form a sequence-specific DNA-binding protein complex which recognizes the core sequence 5'-CAC[GA]TG-3'. MXI1 thus antagonizes MYC transcriptional activity by competing for MAX. | Zinc finger protein 143; Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates in efficient U6 RNA polymerase III transcription via its interaction with CHD8 (By similarity). | 0.541 |
Pou5f1 | Ezh2 | ENSRNOP00000065216 | ENSRNOP00000008149 | POU domain protein. | Similar to Enhancer of zeste homolog 2 (ENX-1), isoform CRA_b. | 0.651 |
Pou5f1 | Lin28b | ENSRNOP00000065216 | ENSRNOP00000037788 | POU domain protein. | Lin-28 homolog B. | 0.558 |
Pou5f1 | Rad21 | ENSRNOP00000065216 | ENSRNOP00000006209 | POU domain protein. | RAD21 cohesin complex component. | 0.415 |
Pou5f1 | Zfp143 | ENSRNOP00000065216 | ENSRNOP00000013733 | POU domain protein. | Zinc finger protein 143; Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates in efficient U6 RNA polymerase III transcription via its interaction with CHD8 (By similarity). | 0.664 |
Rad21 | Ezh2 | ENSRNOP00000006209 | ENSRNOP00000008149 | RAD21 cohesin complex component. | Similar to Enhancer of zeste homolog 2 (ENX-1), isoform CRA_b. | 0.504 |
Rad21 | Pou5f1 | ENSRNOP00000006209 | ENSRNOP00000065216 | RAD21 cohesin complex component. | POU domain protein. | 0.415 |
Rad21 | Six5 | ENSRNOP00000006209 | ENSRNOP00000074243 | RAD21 cohesin complex component. | SIX homeobox 5. | 0.553 |
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