STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssc5dScavenger receptor cysteine-rich family member with 5 domains. (1436 aa)    
Predicted Functional Partners:
Zfp185
Zinc finger protein 185.
      
 0.667
Cdc42ep5
CDC42 effector protein (Rho GTPase binding) 5 (Predicted).
   
  
 0.548
Fibcd1
Fibrinogen C domain containing 1-like 1.
   
 
 0.547
Fibcd1l1
Fibrinogen C domain containing 1 (Predicted).
   
 
 0.543
Fut11
Alpha-(1,3)-fucosyltransferase 11; Probable fucosyltransferase.
      
 0.515
Siglec5
Sialic acid-binding Ig-like lectin 5.
   
 
 0.485
Cbx6
Chromobox 6.
    
 
 0.468
Gprasp1
G-protein coupled receptor-associated sorting protein 1; Modulates lysosomal sorting and functional down-regulation of a variety of G-protein coupled receptors. Targets receptors for degradation in lysosomes via its interaction with BECN2 (By similarity); Belongs to the GPRASP family.
    
 
 0.435
Ckap2
Cytoskeleton-associated protein 2.
    
 
 0.434
Scgb1a1
Uteroglobin; Binds phosphatidylcholine, phosphatidylinositol, polychlorinated biphenyls (PCB) and weakly progesterone, potent inhibitor of phospholipase A2.
  
     0.402
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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