STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcdha4Cadherin-related neuronal receptor c2. (1006 aa)    
Predicted Functional Partners:
Ankdd1a
Ankyrin repeat and death domain-containing 1A.
      
 0.537
Kcnv2
Potassium voltage-gated channel modifier subfamily V member 2; Belongs to the potassium channel family.
   
 
 0.469
Znrd1as
Zinc ribbon domain-containing 1 antisense.
      
 0.465
Cadps2
Calcium-dependent secretion activator 2.
   
  
 0.442
Dcdc2b
Doublecortin domain containing 2b.
      
 0.440
Gatad2b
GATA zinc finger domain-containing 2B.
    
 
 0.434
LOC304725
Contactin-associated protein like 5-2; May play a role in the correct development and proper functioning of the peripheral and central nervous system and be involved in cell adhesion and intercellular communication; Belongs to the neurexin family.
   
  
 0.433
Cntnap5b
Contactin-associated protein like 5-3; May play a role in the correct development and proper functioning of the peripheral and central nervous system and be involved in cell adhesion and intercellular communication; Belongs to the neurexin family.
   
  
 0.419
Cldn23
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
      
 0.414
Rfpl4b
RING-type domain-containing protein.
      
 0.414
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.