STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IrgcInterferon-inducible GTPase 5. (463 aa)    
Predicted Functional Partners:
Tfap2d
Transcription factor AP-2, delta (Predicted).
      
 0.505
Tenm3
Teneurin transmembrane protein 3.
      
 0.485
Fau
Ubiquitin-like protein FUBI.
   
 
 0.474
LOC687780
Ubiquitin-like protein fubi and ribosomal protein S30-like.
   
 
 0.474
LOC687780-2
FAU, ubiquitin like and ribosomal protein S30 fusion.
   
 
 0.469
Stmn3
Stathmin-3; Exhibits microtubule-destabilizing activity, which is antagonized by STAT3.
   
 
 0.460
Mea1
Male-enhanced antigen 1; May play an important role in spermatogenesis and/or testis development.
      
 0.436
Vsx1
Visual system homeobox 1.
      
 0.431
Gng3
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
  
 0.411
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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