STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cmss1Protein CMSS1; Belongs to the CMS1 family. (257 aa)    
Predicted Functional Partners:
Nop53
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
   
    0.827
Ltv1
Protein LTV1 homolog; Belongs to the LTV1 family.
   
  
 0.826
Bysl
Bystin; Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.
   
  
 0.755
Cd3eap
CD3e molecule-associated protein.
   
  
 0.726
Utp23
Similar to RIKEN cDNA D530033C11 (Predicted), isoform CRA_b.
   
    0.703
Nifk
MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
    0.699
Ddx52
Probable ATP-dependent RNA helicase DDX52; Belongs to the DEAD box helicase family. DDX52/ROK1 subfamily.
   
  
 0.677
Nol10
Nucleolar protein 10.
   
  
 0.673
Rpf2
Ribosome production factor 2 homolog.
   
   0.672
Dedd2
Death effector domain-containing 2.
      
 0.666
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.