STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clrn3Clarin-3. (226 aa)    
Predicted Functional Partners:
Tmigd1
Transmembrane and immunoglobulin domain-containing 1.
   
  
 0.646
Hoga1
Similar to RIKEN cDNA 0610010D20 (Predicted); Belongs to the DapA family.
   
  
 0.608
Zfp512b
Uridine kinase-like 1 (Predicted).
      
 0.587
Chst9
Carbohydrate sulfotransferase.
   
  
 0.569
Cbarp
CACN subunit beta-associated regulatory protein.
      
 0.519
Rnf122
RING-type domain-containing protein.
      
 0.517
Crkl
Crk-like protein; May mediate the transduction of intracellular signals. Belongs to the CRK family.
    
 
 0.516
Crk
Adapter molecule crk; [Isoform Crk-II]: Regulates cell adhesion, spreading and migration. Mediates attachment-induced MAPK8 activation, membrane ruffling and cell motility in a Rac-dependent manner. Involved in phagocytosis of apoptotic cells and cell motility via its interaction with DOCK1 and DOCK4. May regulate the EFNA5-EPHA3 signaling.
    
 
 0.516
Ush1c
USH1 protein network component harmonin.
   
 
 0.513
Kctd9
Potassium channel tetramerisation domain containing 9 (Predicted), isoform CRA_b.
      
 0.512
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.