STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcl1RNA terminal phosphate cyclase-like 1. (447 aa)    
Predicted Functional Partners:
Bms1
BMS1 ribosome biogenesis factor.
   
 0.999
Pwp2
PWP2, small subunit processome component.
   
 
 0.996
Wdr43
WD repeat domain 43.
   
 0.996
Utp18
UTP18 small subunit processome component.
   
 0.995
Utp4
Cirrhosis, autosomal recessive 1A (Human).
   
 0.995
Bysl
Bystin; Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.
   
 
 0.995
Imp4
U3 small nucleolar ribonucleoprotein protein IMP4; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing (By similarity).
   
 
 0.994
Utp6
UTP6 small subunit processome component.
   
 
 0.993
Ngdn
Similar to CG11030-PA (Predicted).
   
 
 0.991
Rrp7a
Similar to CGI-96 protein; gastric cancer antigen Zg14.
   
 0.991
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.