STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcdhb12Protocadherin-3; Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain. (797 aa)    
Predicted Functional Partners:
Pcdhb9
Protocadherin beta 9.
  
   
0.864
Pcdhb3
Protocadherin beta 3.
  
  
0.848
Pcdhb4
Protocadherin beta 4.
  
  
0.843
Pcdhb11
Protocadherin beta 11.
  
  
0.837
Pcdhb10
Protocadherin beta 10.
  
  
0.828
Pcdhb8
Protocadherin beta 8.
  
  
0.699
LOC690826
Protocadherin beta-7-like.
  
  
0.580
Tmem94
Transmembrane protein 94.
      
 0.522
Rnf180
Ring finger protein 180.
   
  
 0.516
Pcdhb20
Protocadherin beta 20.
  
  
0.497
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.