STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Szrd1SUZ RNA binding domain containing 1 (152 aa)    
Predicted Functional Partners:
Fam83f
Putative uncharacterized protein RGD1562089_predicted; Family with sequence similarity 83, member F
      
 0.676
Rbm15
RNA binding motif protein 15
   
  
 0.532
Ybx2
Y box binding protein 2
      
 0.470
Aasdh
Aminoadipate-semialdehyde dehydrogenase
      
 0.441
Aff4
AF4/FMR2 family, member 4
      
 0.416
Trim25
Tripartite motif-containing 25
   
  
 0.401
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Gunn rats, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus norvegicus, Rattus rattiscus, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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