STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SrpxSushi repeat-containing protein SRPX. (464 aa)    
Predicted Functional Partners:
Fstl1
Follistatin-related protein 1.
   
  
 0.636
Cnksr1
Connector enhancer of kinase suppressor of Ras 1.
      
 0.559
Mug2
Murinoglobulin-2.
      
 0.499
Sned1
Sushi, nidogen and EGF-like domain-containing protein 1.
   
  
 0.480
Chadl
Chondroadherin-like.
      
 0.474
Pamr1
Peptidase domain-containing-associated with muscle regeneration 1; Belongs to the peptidase S1 family.
      
 0.474
Mfap5
Microfibrillar associated protein 5 (Predicted), isoform CRA_a.
   
  
 0.444
Itgbl1
Integrin beta-like protein 1.
   
  
 0.414
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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