STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Klf16Kruppel-like factor 16. (251 aa)    
Predicted Functional Partners:
Sin3a
SIN3 transcription regulator family member A.
    
 
 0.591
Msantd2
Myb/SANT-like DNA-binding domain containing 2.
    
 
 0.575
Mitd1
MIT domain-containing protein 1; Required for efficient abscission at the end of cytokinesis, together with components of the ESCRT complexes. Seems not to be involved in endosomal transport (By similarity).
      
 0.511
Bex4
Protein BEX4; May play a role in microtubule deacetylation by negatively regulating the SIRT2 deacetylase activity toward alpha-tubulin and thereby participate to the control of cell cycle progression and genomic stability; Belongs to the BEX family.
      
 0.505
Farsa
Phenylalanine--tRNA ligase alpha subunit.
      
 0.476
Klf7
Kruppel-like factor 7 (Ubiquitous) (Predicted).
      
 0.473
Samd11
Sterile alpha motif domain-containing 11.
    
 
 0.454
Rexo1
RNA exonuclease 1 homolog.
   
 
 0.452
Pou6f1
POU domain, class 6, transcription factor 1; Transcription factor that binds preferentially to a variant of the octamer motif (5'-ATGATAAT-3'); Belongs to the POU transcription factor family. Class-6 subfamily.
   
 
 0.426
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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