STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dmbx1Diencephalon/mesencephalon homeobox 1 (Predicted), isoform CRA_a. (376 aa)    
Predicted Functional Partners:
Efcab14
Similar to RIKEN cDNA 4732418C07 (Predicted).
      
 0.541
Mri1
Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the eIF-2B alpha/beta/delta subunits family. MtnA subfamily.
    
 
 0.492
Lrrc27
Leucine-rich repeat-containing 27.
      
 0.476
Churc1
Churchill domain-containing 1.
      
 0.475
Tmco3
Transmembrane and coiled-coil domains 3.
      
 0.474
Tmco3-2
Transmembrane and coiled-coil domains 3 (Predicted), isoform CRA_a.
      
 0.474
Sik3
SIK family kinase 3.
      
 0.467
Foxk1
Forkhead box K1.
   
 
 0.434
LOC100911492
Orthodenticle homeobox 2.
   
 
0.417
Otx2
Homeobox protein OTX2; Transcription factor probably involved in the development of the brain and the sense organs. Can bind to the bicoid/BCD target sequence (BTS): 5'-TCTAATCCC-3'; Belongs to the paired homeobox family. Bicoid subfamily.
   
 
0.416
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.