STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GlmnFKBP-associated protein, isoform CRA_a. (596 aa)    
Predicted Functional Partners:
Heatr1
HEAT repeat-containing protein 1.
   
 
 0.974
Pdcd11
Programmed cell death 11.
   
 
 0.972
Nat10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.966
LOC688637
WD repeat domain 36.
   
 
 0.965
Bms1
BMS1 ribosome biogenesis factor.
   
 
 0.953
Pwp2
PWP2, small subunit processome component.
   
 
 0.951
Dcaf13
DDB1 and CUL4-associated factor 13.
   
 0.951
Nop14
Similar to 2610033H07Rik protein (Predicted), isoform CRA_b.
   
 
 0.944
Wdr75
WD repeat domain 75, isoform CRA_a.
   
 
 0.942
Tbl3
Transducin beta-like protein 3.
   
 
 0.938
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.