STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmc5Transmembrane channel-like protein 5; Probable ion channel. (965 aa)    
Predicted Functional Partners:
Wscd1
WSC domain-containing protein 1.
    
 
 0.686
Trerf1
Transcriptional-regulating factor 1.
      
 0.639
Ankrd66
Ankyrin repeat domain 66.
   
 
 0.601
Tmem221
Transmembrane protein 221.
      
 0.594
Lrrc71
Leucine-rich repeat-containing 71.
    
 
 0.589
Gpr137c
G protein-coupled receptor 137C.
      
 0.576
Tmem191c
Transmembrane protein 191C.
      
 0.571
Tmem171
Transmembrane protein 171.
      
 0.571
Ankub1
Ankrin repeat and ubiquitin domain containing 1.
      
 0.571
Tmem211
Transmembrane protein 211.
      
 0.562
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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