STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpne9Copine-9; Probable calcium-dependent phospholipid-binding protein that may play a role in calcium-mediated intracellular processes. Plays a role in dendrite formation by melanocytes. (553 aa)    
Predicted Functional Partners:
Dzank1
Double zinc ribbon and ankyrin repeat domains 1.
   
  
 0.653
Rnft2
Ring finger protein, transmembrane 2.
   
  
 0.633
Diras1
DIRAS family GTPase 1.
   
  
 0.629
Lrrc24
Leucine-rich repeat-containing 24.
   
  
 0.617
Lonrf2
LON peptidase N-terminal domain and ring finger 2.
   
  
 0.613
Lrrc40
Leucine-rich repeat-containing 40.
      
 0.606
Diras2
DIRAS family GTPase 2.
   
  
 0.569
Zmat4
Zinc finger, matrin type 4.
   
  
 0.549
Scrt1
Scratch homolog 1, zinc finger protein (Drosophila) (Predicted).
   
  
 0.501
Rab9b
RAB9B, member RAS oncogene family.
   
  
 0.498
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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