STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gmcl1Germ cell-less 1, spermatogenesis-associated. (537 aa)    
Predicted Functional Partners:
Ccdc153
Coiled-coil domain-containing protein 153; Belongs to the UPF0610 family.
      
 0.614
Ptges3l
Prostaglandin E synthase 3-like.
      
 0.570
Sprr1b
Small proline-rich protein 1B.
      
 0.535
Styxl1
Serine/threonine/tyrosine-interacting-like 1.
   
  
 0.519
Fam13b
Family with sequence similarity 13, member B.
   
  
 0.516
Mettl11b
Alpha N-terminal protein methyltransferase 1B; Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes monomethylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and Pro in the Pro-Pro-Lys motif. May activate NTMT1 by priming its substrates for trimethylation (By similarity).
      
 0.499
Ppfibp2
PPFIA-binding protein 2.
   
  
 0.478
Csgalnact2
Hexosyltransferase.
      
 0.473
Smdt1
Single-pass membrane protein with aspartate-rich tail 1.
   
  
 0.446
Spata4
Spermatogenesis-associated 4.
      
 0.441
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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