STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1qtnf7C1q and TNF-related 7. (296 aa)    
Predicted Functional Partners:
Ccdc137
Coiled-coil domain-containing 137.
      
 0.640
Tmem69
Transmembrane protein 69.
      
 0.587
Cbln3
Similar to CBLN3 (Predicted).
      
 0.558
Col4a4
Collagen type IV alpha 4 chain.
  
    0.540
C1qtnf12
Similar to RIKEN cDNA 1110035L05 (Predicted).
      
 0.517
Zswim1
Zinc finger, SWIM-type-containing 1.
      
 0.506
Serpinb12
Serpin family B member 12; Belongs to the serpin family.
    
 
 0.452
Ankib1
RBR-type E3 ubiquitin transferase.
    
 
 0.444
Zc3h10
Zinc finger CCCH type-containing 10.
      
 0.439
Btbd1
BTB (POZ) domain containing 1.
      
 0.437
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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