STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Efr3bEFR3 homolog B. (817 aa)    
Predicted Functional Partners:
Ttc7b
Tetratricopeptide repeat domain 7B.
   
 
 0.862
Ttc7a
Tetratricopeptide repeat domain 7A.
   
 
 0.851
Pi4ka
Phosphatidylinositol 4-kinase alpha; Acts on phosphatidylinositol (PtdIns) in the first committed step in the production of the second messenger inositol-1,4,5,- trisphosphate.
   
 
 0.846
Fam126a
Family with sequence similarity 126, member A.
      
 0.673
RGD1562339
RGD1562339.
   
  
 0.653
Zfp474
Zinc finger protein 474.
      
 0.634
Nuggc
Nuclear GTPase, germinal center-associated.
      
 0.618
Rrp7a
Similar to CGI-96 protein; gastric cancer antigen Zg14.
      
 0.614
Tmem205
RGD1563250 (Predicted), isoform CRA_a.
      
 0.576
Wdr17
RCG59107, isoform CRA_a.
   
  
 0.569
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
Server load: very high (>100%) [HD]