STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btbd19BTB domain-containing 19. (286 aa)    
Predicted Functional Partners:
Ubxn7
UBX domain-containing protein 7.
    
   0.771
LOC100911374
UBX domain-containing protein 7-like.
    
   0.771
Mrpl27
Mitochondrial ribosomal protein L27 (Predicted), isoform CRA_a.
   
 
 0.763
Mrpl46
39S ribosomal protein L46, mitochondrial; Belongs to the mitochondrion-specific ribosomal protein mL46 family.
   
 
 0.758
Mrpl23
39S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.757
Mrpl47
Mitochondrial ribosomal protein L47, isoform CRA_a.
   
 
 0.749
Mrpl33
Brain and reproductive organ-expressed protein, isoform CRA_c.
   
 
 0.748
Mrpl19
Ribosomal protein, mitochondrial, L15.
   
 
 0.739
Mrpl30
39S ribosomal protein L30, mitochondrial; Belongs to the universal ribosomal protein uL30 family.
   
 
 0.736
Mrpl40
39S ribosomal protein L40, mitochondrial; Belongs to the mitochondrion-specific ribosomal protein mL40 family.
   
 
 0.734
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.