Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Barx1 | Foxf1 | ENSRNOP00000022830 | ENSRNOP00000065868 | BarH-like homeobox 1 (Predicted). | Forkhead box F1. | 0.784 |
Barx1 | Nkx3-2 | ENSRNOP00000022830 | ENSRNOP00000071016 | BarH-like homeobox 1 (Predicted). | NK3 homeobox 2. | 0.480 |
Ca12 | Foxf1 | ENSRNOP00000023952 | ENSRNOP00000065868 | Membrane-bound carbonic anhydrase 12; Belongs to the alpha-carbonic anhydrase family. | Forkhead box F1. | 0.576 |
Ca12 | Pax1 | ENSRNOP00000023952 | ENSRNOP00000062281 | Membrane-bound carbonic anhydrase 12; Belongs to the alpha-carbonic anhydrase family. | Paired box gene 1 (Mapped). | 0.558 |
Foxf1 | Barx1 | ENSRNOP00000065868 | ENSRNOP00000022830 | Forkhead box F1. | BarH-like homeobox 1 (Predicted). | 0.784 |
Foxf1 | Ca12 | ENSRNOP00000065868 | ENSRNOP00000023952 | Forkhead box F1. | Membrane-bound carbonic anhydrase 12; Belongs to the alpha-carbonic anhydrase family. | 0.576 |
Foxf1 | Gata6 | ENSRNOP00000065868 | ENSRNOP00000036967 | Forkhead box F1. | Transcription factor GATA-6; Transcriptional activator that regulates SEMA3C and PLXNA2. May regulate genes that protect epithelial cells from bacterial infection. Involved in gene regulation specifically in the gastric epithelium. Involved in bone morphogenetic protein (BMP)-mediated cardiac-specific gene expression. Binds to BMP response element (BMPRE) DNA sequences within cardiac activating regions. | 0.587 |
Foxf1 | Myocd | ENSRNOP00000065868 | ENSRNOP00000072988 | Forkhead box F1. | Myocardin; Smooth muscle cells (SM) and cardiac muscle cells-specific transcriptional factor which uses the canonical single or multiple CArG boxes DNA sequence. Acts as a cofactor of serum response factor (SRF) with the potential to modulate SRF-target genes (By similarity). Plays a crucial role in cardiogenesis and differentiation of the smooth muscle cell lineage (myogenesis) (By similarity). | 0.557 |
Foxf1 | Nkx2-3 | ENSRNOP00000065868 | ENSRNOP00000051598 | Forkhead box F1. | NK2 transcription factor related, locus 3 (Drosophila) (Predicted). | 0.596 |
Foxf1 | Nkx2-5 | ENSRNOP00000065868 | ENSRNOP00000028155 | Forkhead box F1. | Homeobox protein Nkx-2.5; Implicated in commitment to and/or differentiation of the myocardial lineage. Acts as a transcriptional activator of ANF in cooperation with GATA4. Binds to the core DNA motif of NPPA promoter. It is transcriptionally controlled by PBX1 and acts as a transcriptional repressor of CDKN2B. It is required for spleen development; Belongs to the NK-2 homeobox family. | 0.602 |
Foxf1 | Nkx3-2 | ENSRNOP00000065868 | ENSRNOP00000071016 | Forkhead box F1. | NK3 homeobox 2. | 0.607 |
Foxf1 | Pax1 | ENSRNOP00000065868 | ENSRNOP00000062281 | Forkhead box F1. | Paired box gene 1 (Mapped). | 0.693 |
Foxf1 | Pitx1 | ENSRNOP00000065868 | ENSRNOP00000015307 | Forkhead box F1. | Pituitary homeobox 1; Sequence-specific transcription factor that binds gene promoters and activates their transcription. May play a role in the development of anterior structures, and in particular, the brain and facies and in specifying the identity or structure of hindlimb. | 0.590 |
Foxf1 | Pou1f1 | ENSRNOP00000065868 | ENSRNOP00000000905 | Forkhead box F1. | Pituitary-specific positive transcription factor 1; Transcription factor involved in the specification of the lactotrope, somatotrope, and thyrotrope phenotypes in the developing anterior pituitary. Activates growth hormone and prolactin genes. Specifically binds to the consensus sequence 5'-TAAAT-3'. Belongs to the POU transcription factor family. Class-1 subfamily. | 0.553 |
Gata6 | Foxf1 | ENSRNOP00000036967 | ENSRNOP00000065868 | Transcription factor GATA-6; Transcriptional activator that regulates SEMA3C and PLXNA2. May regulate genes that protect epithelial cells from bacterial infection. Involved in gene regulation specifically in the gastric epithelium. Involved in bone morphogenetic protein (BMP)-mediated cardiac-specific gene expression. Binds to BMP response element (BMPRE) DNA sequences within cardiac activating regions. | Forkhead box F1. | 0.587 |
Gata6 | Myocd | ENSRNOP00000036967 | ENSRNOP00000072988 | Transcription factor GATA-6; Transcriptional activator that regulates SEMA3C and PLXNA2. May regulate genes that protect epithelial cells from bacterial infection. Involved in gene regulation specifically in the gastric epithelium. Involved in bone morphogenetic protein (BMP)-mediated cardiac-specific gene expression. Binds to BMP response element (BMPRE) DNA sequences within cardiac activating regions. | Myocardin; Smooth muscle cells (SM) and cardiac muscle cells-specific transcriptional factor which uses the canonical single or multiple CArG boxes DNA sequence. Acts as a cofactor of serum response factor (SRF) with the potential to modulate SRF-target genes (By similarity). Plays a crucial role in cardiogenesis and differentiation of the smooth muscle cell lineage (myogenesis) (By similarity). | 0.653 |
Gata6 | Nkx2-5 | ENSRNOP00000036967 | ENSRNOP00000028155 | Transcription factor GATA-6; Transcriptional activator that regulates SEMA3C and PLXNA2. May regulate genes that protect epithelial cells from bacterial infection. Involved in gene regulation specifically in the gastric epithelium. Involved in bone morphogenetic protein (BMP)-mediated cardiac-specific gene expression. Binds to BMP response element (BMPRE) DNA sequences within cardiac activating regions. | Homeobox protein Nkx-2.5; Implicated in commitment to and/or differentiation of the myocardial lineage. Acts as a transcriptional activator of ANF in cooperation with GATA4. Binds to the core DNA motif of NPPA promoter. It is transcriptionally controlled by PBX1 and acts as a transcriptional repressor of CDKN2B. It is required for spleen development; Belongs to the NK-2 homeobox family. | 0.891 |
Myocd | Foxf1 | ENSRNOP00000072988 | ENSRNOP00000065868 | Myocardin; Smooth muscle cells (SM) and cardiac muscle cells-specific transcriptional factor which uses the canonical single or multiple CArG boxes DNA sequence. Acts as a cofactor of serum response factor (SRF) with the potential to modulate SRF-target genes (By similarity). Plays a crucial role in cardiogenesis and differentiation of the smooth muscle cell lineage (myogenesis) (By similarity). | Forkhead box F1. | 0.557 |
Myocd | Gata6 | ENSRNOP00000072988 | ENSRNOP00000036967 | Myocardin; Smooth muscle cells (SM) and cardiac muscle cells-specific transcriptional factor which uses the canonical single or multiple CArG boxes DNA sequence. Acts as a cofactor of serum response factor (SRF) with the potential to modulate SRF-target genes (By similarity). Plays a crucial role in cardiogenesis and differentiation of the smooth muscle cell lineage (myogenesis) (By similarity). | Transcription factor GATA-6; Transcriptional activator that regulates SEMA3C and PLXNA2. May regulate genes that protect epithelial cells from bacterial infection. Involved in gene regulation specifically in the gastric epithelium. Involved in bone morphogenetic protein (BMP)-mediated cardiac-specific gene expression. Binds to BMP response element (BMPRE) DNA sequences within cardiac activating regions. | 0.653 |
Myocd | Nkx2-5 | ENSRNOP00000072988 | ENSRNOP00000028155 | Myocardin; Smooth muscle cells (SM) and cardiac muscle cells-specific transcriptional factor which uses the canonical single or multiple CArG boxes DNA sequence. Acts as a cofactor of serum response factor (SRF) with the potential to modulate SRF-target genes (By similarity). Plays a crucial role in cardiogenesis and differentiation of the smooth muscle cell lineage (myogenesis) (By similarity). | Homeobox protein Nkx-2.5; Implicated in commitment to and/or differentiation of the myocardial lineage. Acts as a transcriptional activator of ANF in cooperation with GATA4. Binds to the core DNA motif of NPPA promoter. It is transcriptionally controlled by PBX1 and acts as a transcriptional repressor of CDKN2B. It is required for spleen development; Belongs to the NK-2 homeobox family. | 0.825 |
page 1 of 2