STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmc4Transmembrane channel-like protein 4; Probable ion channel; Belongs to the TMC family. (698 aa)    
Predicted Functional Partners:
Mboat7l1
Membrane-bound O-acyltransferase domain-containing 7-like 1; Belongs to the membrane-bound acyltransferase family.
 
    
 0.811
Mboat7
Membrane bound O-acyltransferase domain containing 7.
 
    
 0.811
Paxbp1
PAX3 and PAX7-binding protein 1.
      
 0.722
Coprs
Coordinator of PRMT5 and differentiation stimulator.
      
 0.689
Map6d1
MAP6 domain-containing 1.
      
 0.673
Comtd1
Catechol-O-methyltransferase domain containing 1 (Predicted), isoform CRA_a.
   
  
 0.653
Dus2
Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) (Predicted), isoform CRA_a.
   
  
 0.650
Pnpla3
Patatin-like phospholipase domain-containing 3.
      
 0.626
Disp2
Dispatched homolog 2 (Drosophila) (Predicted), isoform CRA_d.
      
 0.576
Lpcat4
Lysophosphatidylcholine acyltransferase 4.
      
 0.563
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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