STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTPOrthopedia homeobox. (325 aa)    
Predicted Functional Partners:
LDB1
LIM domain binding 1.
    
 0.613
LDB2
LIM domain binding 2.
    
 0.613
PAX8
Paired box 8.
    
 
 0.588
SRF
Serum response factor.
    
 0.574
PAX2
Paired box 2.
    
 
 0.563
PAX5
Paired box 5.
    
 
 0.557
LHX3
LIM homeobox 3.
   
0.523
NHLH2
Nescient helix-loop-helix 2.
   
 0.521
Hopx
Homeobox domain-containing protein.
      
 0.512
NHLH1
Nescient helix-loop-helix 1.
   
 0.505
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.