Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BRCA2 | Brca1 | ENSCPOP00000004635 | ENSCPOP00000012252 | BRCA2 DNA repair associated. | Uncharacterized protein. | 0.996 |
BRCA2 | EXO1 | ENSCPOP00000004635 | ENSCPOP00000000318 | BRCA2 DNA repair associated. | Exonuclease 1. | 0.899 |
BRCA2 | FANCM | ENSCPOP00000004635 | ENSCPOP00000001306 | BRCA2 DNA repair associated. | FA complementation group M. | 0.782 |
BRCA2 | MUS81 | ENSCPOP00000004635 | ENSCPOP00000007258 | BRCA2 DNA repair associated. | MUS81 structure-specific endonuclease subunit. | 0.857 |
BRCA2 | RAD51 | ENSCPOP00000004635 | ENSCPOP00000012705 | BRCA2 DNA repair associated. | DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] | 0.999 |
BRCA2 | RAD51C | ENSCPOP00000004635 | ENSCPOP00000004133 | BRCA2 DNA repair associated. | RAD51 paralog C. | 0.982 |
BRCA2 | RAD52 | ENSCPOP00000004635 | ENSCPOP00000000644 | BRCA2 DNA repair associated. | RAD52 homolog, DNA repair protein. | 0.710 |
BRCA2 | RPA1 | ENSCPOP00000004635 | ENSCPOP00000000030 | BRCA2 DNA repair associated. | Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. | 0.719 |
BRCA2 | WRN | ENSCPOP00000004635 | ENSCPOP00000002674 | BRCA2 DNA repair associated. | WRN RecQ like helicase. | 0.991 |
BRCA2 | XRCC3 | ENSCPOP00000004635 | ENSCPOP00000015766 | BRCA2 DNA repair associated. | DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. | 0.968 |
Brca1 | BRCA2 | ENSCPOP00000012252 | ENSCPOP00000004635 | Uncharacterized protein. | BRCA2 DNA repair associated. | 0.996 |
Brca1 | EXO1 | ENSCPOP00000012252 | ENSCPOP00000000318 | Uncharacterized protein. | Exonuclease 1. | 0.926 |
Brca1 | FANCM | ENSCPOP00000012252 | ENSCPOP00000001306 | Uncharacterized protein. | FA complementation group M. | 0.773 |
Brca1 | MUS81 | ENSCPOP00000012252 | ENSCPOP00000007258 | Uncharacterized protein. | MUS81 structure-specific endonuclease subunit. | 0.868 |
Brca1 | RAD51 | ENSCPOP00000012252 | ENSCPOP00000012705 | Uncharacterized protein. | DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] | 0.993 |
Brca1 | RAD51C | ENSCPOP00000012252 | ENSCPOP00000004133 | Uncharacterized protein. | RAD51 paralog C. | 0.893 |
Brca1 | RAD52 | ENSCPOP00000012252 | ENSCPOP00000000644 | Uncharacterized protein. | RAD52 homolog, DNA repair protein. | 0.887 |
Brca1 | RPA1 | ENSCPOP00000012252 | ENSCPOP00000000030 | Uncharacterized protein. | Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. | 0.885 |
Brca1 | WRN | ENSCPOP00000012252 | ENSCPOP00000002674 | Uncharacterized protein. | WRN RecQ like helicase. | 0.995 |
Brca1 | XRCC3 | ENSCPOP00000012252 | ENSCPOP00000015766 | Uncharacterized protein. | DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. | 0.890 |
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