STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COCHCochlin; Plays a role in the control of cell shape and motility in the trabecular meshwork. (553 aa)    
Predicted Functional Partners:
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.915
FRAS1
Fraser extracellular matrix complex subunit 1.
    
 0.730
GLE1
GLE1 RNA export mediator.
    
 0.716
FREM1
FRAS1 related extracellular matrix 1.
    
 0.714
FREM3
FRAS1 related extracellular matrix 3.
    
 0.714
ASF1B
Anti-silencing function 1B histone chaperone.
    
 0.640
ASF1A
Anti-silencing function 1A histone chaperone.
    
 0.640
RPS15A
Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.
   
 
 0.629
ARL6IP1
ADP ribosylation factor like GTPase 6 interacting protein 1.
   
 
 0.629
RPS28
Ribosomal protein S28.
   
   0.614
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.