STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAA11079.1Hypothetical protein. (131 aa)    
Predicted Functional Partners:
iscU
Iron-sulfur cluster assembly protein IscU.
 
    0.993
sufC
Iron-sulfur cluster assembly protein SufC.
 
  
 0.967
sufS
Cysteine desulfurase/selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.965
sufB
Iron-sulfur cluster assembly protein SufB.
 
   
 0.948
sufD
Iron-sulfur cluster assembly protein SufD.
 
   
 0.935
GAA11073.1
Putative SufR family transcriptional regulator.
       0.779
GAA10862.1
Putative cysteine desulfurase.
 
  
 0.644
GAA11081.1
Hypothetical protein.
       0.630
GAA15077.1
Putative aminotransferase.
 
  
 0.541
paaH
phenylacetate-CoA oxygenase subunit PaaH.
  
  
 0.530
Your Current Organism:
Gordonia alkanivorans
NCBI taxonomy Id: 1027371
Other names: G. alkanivorans NBRC 16433, Gordonia alkanivorans CIP 106363, Gordonia alkanivorans DSM 44369, Gordonia alkanivorans NBRC 16433, Gordonia alkanivorans str. NBRC 16433, Gordonia alkanivorans strain NBRC 16433
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.